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ERX6341013: MinION sequencing; Raw reads: Providencia_alcalifaciens_strain_2019-04-29290-1-7_Nanopore
1 OXFORD_NANOPORE (MinION) run: 69,468 spots, 198.1M bases, 166.6Mb downloads

Design: unspecified
Submitted by: Norwegian Veterinary Institute
Study: Providencia alcalifaciens Nanopore sequence data
show Abstracthide Abstract
In Norway there was an outbreak of acute haemorrhagic diarrhoea syndrome in dogs in 2019. Bacterial cultivation indicated that strains from the species Providencia alcalifaciens were the likely cause of the syndrome. Here we performed shotgun sequencing and hybrid whole genome assembly using MiSeq Illumina and Oxford nanopore sequence data on P. alcalifaciens isolates. The goal of our analysis was to determine if the isolates obtained from different diseased dogs were from a common point source. These analysis were performed as part of the Norwegian Veterinary Institute in-house project SEQTECH.
Sample: 2019-04-29290-1-7
SAMEA9926154 • ERS7604502 • All experiments • All runs
Library:
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 69,468 spots, 198.1M bases, 166.6Mb
Run# of Spots# of BasesSizePublished
ERR671641969,468198.1M166.6Mb2021-10-02

ID:
16746414

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